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1. Hasan Awad Aljohi*, Wanfei Liu* , Qiang Lin*, Jun Yu# and Songnian Hu#. ISVASE: identification of sequence variant associated with splicing event using RNA-seq data. BMC Bioinformatics. 2017.18 (320)
2. Hasan Awad Aljohi*,Wanfei Liu*, Qiang Lin*...Songnian Hu#, Jun Yu#. Complete Sequence and Comparative Analysis of the Mitochondrial Genome of Coconut Palm (Cocos nucifera). PLoS One. 2016.11 (10)
3. Chengqi Xin*, Wanfei Liu*, Qiang Lin*, … Jun Yu. Profiling microRNA expression during multi-staged date palm (Phoenix dactylifera L.) fruit development. Genomics. 2015, 105(4): 242-51
4. Wei Xu*, Chengqi Xin*, Qiang Lin*, …, Songnian Hu. Adolescent Mouse Takes on An Active Transcriptomic Expression During Postnatal Cerebral Development. Genomics Proteomics & Bioinformatics 12(2014) 111-119
5. Ibrahim S. Al-Mssallem*, Songnian Hu*, Xiaowei Zhang*, Qiang Lin*, Wanfei Liu*, Jun Tan*,… , Jun Yu. Genome Sequences and Genetic Variations of Date Palm (Phoenix dactylifera L.). Nature Communication. 08/2013; 4:2274
6. Qiang Lin*, Peng Cui*, Feng Ding, Songnian Hu, Jun Yu. Replication-Associated Mutational Pressure (RMP) Governs Strand-Biased Compositional Asymmetry (SCA) and Gene Organization in Animal Mitochondrial Genomes. Current Genomics. 03/2012; 13(1):28-36.
7. Peng Cui*, Qiang Lin*, Feng Ding*, Songnian Hu, Jun Yu. The transcript-centric mutations in human genomes. Genomics, proteomics & bioinformatics. 02/2012; 10(1):11-22. 8. Peng Cui*, Feng Ding*, Qiang Lin*, Lingfang Zhang, Ang Li, Zhang Zhang, Songnian Hu, Jun Yu. Distinct contributions of replication and transcription to mutation rate variation of human genomes. Genomics, proteomics & bioinformatics. 02/2012; 10(1):4-10.
9. Peng Cui*, Qiang Lin*, …, Jun Yu. The disequilibrium of nucleosomes distribution along chromosomes plays a functional and evolutionarily role in regulating gene expression. PLoS One. 01/2011; 6(8):e23219
10. Peng Cui*, Qiang Lin*, Feng Ding*, …, Jun Yu. A comparison between ribo-minus RNA-sequencing and polyA-selected RNA-sequencing. Genomics. 11/2010; 96(5):259-65.
11. Peng Cui*, Qiang Lin*, Chengqi Xin*,…, Jun Yu. Hydroxyurea-induced global transcriptional suppression in mouse ES cells. Carcinogenesis. 09/2010; 31(9):1661-8.
12. Peng Cui*, Lingfang Zhang*, Qiang Lin*, …, Jun Yu. A novel mechanism of epigenetic regulation: nucleosome-space occupancy. Biochemical and biophysical research communications. 11/2009; 391(1):884-9
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