1. Radoshitzky S.R., Bao Y., et al. (2015). Past, present, and future of arenavirus taxonomy. Archives of Virology 160, 1851-1874.
2. Kuhn J.H., Dürrwald R., Bao Y., et al. (2015). Taxonomic reorganization of the family Bornaviridae. Archives of Virology 160, 621-632.
3. Kuhn J.H., Andersen K.G., Baize S., Bao Y., et al. (2014). Nomenclature- and Database-Compatible Names for the Two Ebola Virus Variants that Emerged in Guinea and the Democratic Republic of the Congo in 2014. Viruses 6, 4760-4799.
4. Kuhn J.H., Andersen K.G., Bao Y., et al. (2014). Filovirus RefSeq Entries: Evaluation and Selection of Filovirus Type Variants, Type Sequences, and Names. Viruses 6, 3663-3682.
5. Bao Y., Chetvernin V. & Tatusova T. (2014). Improvements to pairwise sequence comparison (PASC): a genome-based web tool for virus classification. Archives of Virology 159, 3293-3304.
6. Du Z., Chen A., Chen W., Liao Q., Zhang H., Bao Y., Roossinck M.J. & Carr J.P. (2014). Nuclear-cytoplasmic partitioning of the Cucumber mosaic virus 2b protein determines the balance between its roles as a virulence determinant and RNA silencing suppressor. Journal of Virology 88, 5228-5241.
7. Brister J.R., Bao Y., Zhdanov S.A., Ostapchuck Y., Chetvernin V., Kiryutin B., Zaslavsky L., Kimelman M. & Tatusova T.A. (2014). Virus Variation Resource--recent updates and future directions. Nucleic Acids Research 42, D660-D665.
8. Kuhn J.H., Bao Y., et al. (2014). Virus nomenclature below the species level: a standardized nomenclature for filovirus strains and variants rescued from cDNA. Archives of Virology 159, 1229-1237.
9. Brister J.R. & Bao Y. (2013). Virus Variation. 2013 Nov 14. In: The NCBI Handbook [Internet]. 2nd edition. Bethesda (MD): National Center for Biotechnology Information (US); 2013-. Available from: http://www.ncbi.nlm.nih.gov/books/NBK143949/
10. Bao Y., Brister J.R., Blinkova O., et al. (2013). About Viral and Phage Genome Processing and Tools. 2013 Mar 30 [Updated 2013 May 10]. In: The NCBI Handbook [Internet]. 2nd edition. Bethesda (MD): National Center for Biotechnology Information (US); 2013-. Available from: http://www.ncbi.nlm.nih.gov/books/NBK153522/
11. Bao Y., Chetvernin V. & Tatusova T. (2012). PAirwise Sequence Comparison (PASC) and Its Application in the Classification of Filoviruses. Viruses 4, 1318-1327.
12. Gilbert, J.A., Bao, Y., et al. (2012). Report of the 13th Genomic Standards Consortium Meeting, Shenzhen, China, March 4–7, 2012. Standards in Genomic Sciences 6, 276-286.
13. Brister, J.R., Bao, Y., Kuiken, C., Lefkowitz, E.J., Mercier, P.L., Leplae, R., Madupu, R., Scheuermann, R.H., Schobel, S., Seto, D., Shrivastava, S., Sterk, P., Zeng, Q., Klimke, W. & Tatusova, T. (2010). Towards Viral Genome Annotation Standards, Report from the 2010 NCBI Annotation Workshop. Viruses 2, 2258-2268.
14. Resch, W., Zaslavsky, L.,Kiryutin B., Rozanov, M., Bao Y. &Tatusova T.A. (2009). Virus variation resource at the national center for biotechnology information: dengue virus. BMC Microbiology 9, 65.
15. Bao, Y., Kapustin Y.&Tatusova T. (2008). Virus Classification by Pairwise Sequence Comparison (PASC).Encyclopedia of Virology, 5 vols. (B.W.J. Mahy and M.H.V. Van Regenmortel, Editors). Oxford: Elsevier. Vol. 5, 342-348.
16. Zaslavsky, L., Bao Y. &Tatusova T.A. (2008). Visualization of large influenza virus sequence datasets using adaptively aggregated trees with sampling-based subscale representation. BMC Bioinformatics9, 237.
17. Bao, Y., Bolotov P., Dernovoy D., Kiryutin B., Zaslavsky L., Tatusova T., Ostell J. & Lipman D. (2008). The influenza virus resource at the national center for biotechnology information. Journal of Virology82, 596-601.
18. Bao, Y., Bolotov P., Dernovoy D., Kiryutin B. & Tatusova T. (2007). FLAN: a web server for influenza virus genome annotation. Nucleic Acids Research35, W280-W284.
19. Ghedin E, Sengamalay NA, Shumway M, Zaborsky J, Feldblyum T, Subbu V, Spiro DJ, Sitz J, Koo H, Bolotov P, Dernovoy D, Tatusova T, Bao Y, St George K, Taylor J, Lipman DJ, Fraser CM, Taubenberger JK & Salzberg SL. (2005). Large-scale sequencing of human influenza reveals the dynamic nature of viral genome evolution. Nature 437, 1162-1166.
20. Holmes E. C., Ghedin E., Miller N., Taylor J., Bao Y., St. George K., Grenfell B.T., Salzberg S.L., Fraser C.M., Lipman D.J. &Taubenberger J.K. (2005). Whole-Genome Analysis of Human Influenza A Virus Reveals Multiple Persistent Lineages and Reassortment among Recent H3N2 Viruses. PLoS Biology 3: e300.
21. Bao, Y., Federhen, S., Leipe, D., Pham, V., Resenchuk, S., Rozanov, M., Tatusov, R. & Tatusova, T.(2004).National Center for Biotechnology Information Viral Genomes Project.Journal of Virology78, 7291-7298.
|