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（# co-first author， * Corresponding author）
1.Guojing Liu#, Rui Zhang#, Jin Xu, Chung-I Wu* and Xuemei Lu*. Functional conservation of both CDS- and 3’UTR- located miRNA binding sites between species. Molecular biology and evolution, 2015, 32(3): 623-628
2.Yang Lyu, Yang Shen, Heng Li, Yuxin Chen, Li Guo, Yixin Zhao, Eric Hungate, Suhua Shi, Chung-I Wu*, and Tian Tang*. New microRNAs in Drosophila--birth, death and cycles of adaptive evolution. PLoS genetics. 2014; 10, e1004096.
3.Jin Xu#，Rui Zhang#，Yang Shen，Guojing Liu，Xuemei Lu，Chung-I Wu*. The evolution of evolvability in microrna target sites in vertebrates. Genome research. 2013;23:1810-1816
4.Zechen Chong#，Weiwei Zhai#，Chunyan Li，Min Gao，Qiang Gong，Jue Ruan，Juan Li，Lan Jiang，Xuemei Lu，EricHungate，Chung-I Wu*. The evolution of small insertions and deletions in the coding genes of drosophila melanogaster. Molecular biology and evolution. 2013;30:2699-2708
5.Zheng Hu, Yunxin Fu, Anthony J Greenberg, Chung-I Wu*, Weiwei Zhai*. Age-dependent transition from cell-level to population-level control in murine intestinal homeostasis revealed by coalescence analysis. PLoS genetics. 2013; 9, e1003326.
6.Guodong Wang#, Weiwei Zhai#, HechuangYang, Ruoxi Fan, Xue Cao, Li Zhong, Lu Wang, Fei Liu, Hong Wu, Luguang Cheng, Andrei D. Poyarkov, Nikolai A. Poyarkov JR, Shu-sheng Tang, Wenming Zhao, Yun Gao, Xuemei Lu, David M. Irwin, Peter Savolainen, Chung-I Wu*, Yaping Zhang*. The genomics of selection in dogs and the parallel evolution between dogs and humans. Nature communications. 2013;4:1860-1864
7.Jue Ruan#, Lan Jiang#, Zechen Chong#, Qiang Gong#, Heng Li, Chunyan Li, Yong Tao, Caihong Zheng, Weiwei Zhai, David Turissini, Charles H Cannon, Xuemei Lu*, Chung-I Wu*. Pseudo-sanger sequencing: Massively parallel production of long and near error-free reads using NGS technology. BMC genomics. 2013; 14(1): 711-719
8.Qiang Gong, Yong Tao, Jianrong Yang, Jun Cai, Yunfei Yuan, Jue Ruan, Jin Yang, Huiliang Liu, Wanghua Li, Xuemei Lu, Shimei Zhuang, Sanming Wang, Chung-I Wu*. Identification of medium-sized genomic deletions with low coverage, mate-paired restricted tags. BMC genomics. 2013;14:51-55
9.Caihong Zheng, Xuexia Miao, Yanen Li, Ying Huang, Jue Ruan, Xi Ma, Li Wang, Chung-I Wu*, and Jun Cai*. Determination of genomic copy number alteration emphasizing a restriction site-based strategy of genome re-sequencing. Bioinformatics. 2013; 29, 2813-2821.
10.Shu Fang, Roman Yukilevich, Ying Chen, David A Turissini, Kai Zeng, Ian A Boussy, and Chung-I Wu*. Incompatibility and competitive exclusion of genomic segments between sibling Drosophila species. PLoS genetics. 2012;8, e1002795.
11.Zecheng Chong#, Jue Ruan# *, and Chung-I Wu*. Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads. Bioinformatics. 2012; 28, 2732-2737.
12.Ziwen He, Xinnian Li, Shaoping Ling, Yunxin Fu, Eric Hungate, Suhua Shi*, Chung-I Wu*. Estimating DNA polymorphism from next generation sequencing data with high error rate by dual sequencing applications. BMC genomics. 2013; 14, 535.
13.Yong Tao#, Jue Ruan#, Shiou-Hwei Yeh#, Xuemei Lu#, Yu Wang#, Weiwei Zhai#, Jun Cai#, Shaoping Ling, Qiang Gong, Zechen Chong, Zhengzhong Qu, Qianqian Li, Jiang Liu, Jin Yang, Caihong Zheng, Changqing Zeng, Hurng-Yi Wang, Jing Zhang, Sheng-Han Wang, Lingtong Hao, Lili Dong, Wenjie Li, Min Sun, Wei Zou, Caixia Yu, Chaohua Li, Guojing Liu, Lan Jiang, Jin Xu, Huanwei Huang, Chunyan Li, Shuangli Mi, Bing Zhang, Baoxian Chen, Wenming Zhao, Songnian Hu, Shi-Mei Zhuang, Yang Shen, Suhua Shi, Christopher Brown, Kevin P.White, Ding-Shinn Chen*, Pei-Jer Chen, Chung-I Wu*. Rapid growth of a hepatocellular carcinoma and the driving mutations revealed by cell-population genetic analysis of whole-genome data. Proc Natl Acad Sci USA. 2011;108:12042-12047
14.Renchao Zhou#, Shaoping Ling#, Wenming Zhao#, Naoki Osada, Sufang Chen, Meng Zhang, Ziwen He, Hua Bao, Cairong Zhong, Bing Zhang, Xuemei Lu, David Turissini, Norman C. Duke, Jian Lu*, Suhua Shi*, Chung-I Wu*. Population genetics in nonmodel organisms: Ii. Natural selection in marginal habitats revealed by deep sequencing on dual platforms. Molecular biology and evolution. 2011; 28(10): 2833-2842
15.Yang Shen, Yang Lv, Lei Huang, Wensheng Liu, Ming Wen, Tian Tang, Rui Zhang, Eric Hungate, Suhua Shi*, Chung-I Wu*. Testing hypotheses on the rate of molecular evolution in relation to gene expression using microRNAs. Proc Natl Acad Sci USA. 2011;108, 15942-15947.
16.Ziwen He#, Weiwei Zhai#, Haijun Wen#, Tian Tang, Yu Wang, Xuemei Lu, Anthony J. Greenberg, Richard R. Hudson, Chung-I Wu*, Suhua Shi*. Two evolutionary histories in the genome of rice: The roles of domestication genes. PLoS genetics. 2011; 7(6): 1-3
17.Xuemei Lu, Chung-I Wu*. Sex, sex chromosomes and gene expression. BMC biology. 2011;9:30-32
18.Xuemei Lu#, Joshua A. Shapiro#, Chau-Ti Ting, Yan Li, Chunyan Li, Jin Xu, Huanwei Huang, Ya-Jen Cheng, Anthony J. Greenberg, Shou-Hsien Li, Mao-Lien Wu, Yang Shen, Chung-I Wu*. Genome-wide misexpression of x-linked versus autosomal genes associated with hybrid male sterility. Genome research. 2010; 20(8): 1097-1102
19.Tian Tang#, Supriya Kumar#, Yang Shen, Jian Lu, Maolien Wu, Suhua Shi, Wen-Hsiung Li*, Chung-I Wu*. Adverse interactions between micro-RNAs and target genes from different species. Proc Natl Acad Sci USA. 2010;107, 12935-12940.
20.Guodong Wang#, Ruoxi Fan#,Weiwei Zhai, Fei Liu, Lu Wang, Li Zhong, Hong Wu, Hechuan Yang, Shifang Wu,Chunling Zhu, ,Yan Li, Yun Gao, Rili Ge, Chung-I Wu, Yaping Zhang*. Genetic convergence in the adaptation of dogs and humans to the high-altitude environment of the tibetan plateau. Genome biology and evolution. 2014; 6, 2122-2128.
21.Shanye Yin#, Jing Yang#, Bin Lin#, Wenjun Deng#, Yuchao Zhang, Xianfu Yi,Yufang Shi, Yong Tao, Jun Cai, Chung-I Wu, Guoping Zhao, Laurence D Hurst, Jie Zhang, Landian Hu*, Xiangyin Kong*. Exome sequencing identifies frequent mutation of MLL2 in non-small cell lung carcinoma from Chinese patients. Scientific reports. 2014; 4, 6036.
22.Lan Jiang#, Jing Zhang#, Jing-Jing Wang#, Lu Wang, Li Zhang, Guoqiang Li, Xiaodan Yang,Xin Ma, Xin Sun, Jun Cai, Jun Zhang, Xingxu Huang, Miao Yu, Xuegeng Wang, Feng Liu, Chung-I Wu, Chuan He, Bo Zhang, Weimin Ci*, Jiang Liu*. Sperm, but not oocyte, DNA methylome is inherited by zebrafish early embryos, Cell, 2013, 153, 773-84, (Cover story，highlighted by Cell, Nature Review Genetics, etc.）
专利：
1.李春燕，杨芳，刘稳升，王瑜，吕雪梅，吴仲义，用于恶性肿瘤治疗的组合物及其应用，中国，201210046682.0 专利
2.李春燕，董恩成，刘珍珍，吕雪梅，吴仲义，筛选肿瘤早期诊断靶标的Small RNA-Seq库的构建方法，中国，201210041472.2 专利
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